rs579281327 SNP Detail

Summary

• ID
  rs579281327
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120931978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC CTGCCCACCT ACCCACCTGC
  T
  CACCTGCCCA CCTGTTTACC TGCCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ
ss915663104	MGP_WTSI_2_121101497	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ
rs579281327					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915663104	MGP_WTSI_2_121101497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120931978 () rs orientation: forward

Symbol	Name	Function Class
Rr563773	regulatory region 563773	417 bp proximal
Rr563774	regulatory region 563774	715 bp proximal
Tgm7	transglutaminase 7	Intron
Tssr25900	transcription start site region 25900	332 bp upstream