rs579142803 SNP Detail

Summary

• ID
  rs579142803
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147613501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAT CCTGTGGGGG GTATTTTTGG
  G
  TTTTTTTGTT TTTGTTTTTG TTTTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	SEA/GnJ
ss917138535	MGP_WTSI_4_147529044	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	SEA/GnJ
rs579142803					SNP	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917138535	MGP_WTSI_4_147529044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147613501 () rs orientation: forward

Symbol	Name	Function Class
Gm13141	predicted gene 13141	870 bp upstream
Gm69897	predicted gene, 69897	within coordinates
Rr398834	regulatory region 398834	138 bp downstream
Rr604496	regulatory region 604496	1495 bp proximal