rs578806016 SNP Detail

Summary

• ID
  rs578806016
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148215514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGC ATCTGGAGTG GCCCCGTGTG
  T
  GTGTGGGGGG GTGTGGGGGA CAAAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss917140493	MGP_WTSI_4_148131057	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs578806016					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917140493	MGP_WTSI_4_148131057	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148215514 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15291	CpG island 15291			within coordinates
Draxin	dorsal inhibitory axon guidance protein			mRNA-UTR
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr604596	regulatory region 604596			370 bp distal
Rr604597	regulatory region 604597			949 bp distal
Rr604598	regulatory region 604598			132 bp distal
Rr604599	regulatory region 604599			within coordinates
Tssr1378	transcription start site region 1378			194 bp downstream
Tssr40251	transcription start site region 40251			285 bp downstream
Tssr40252	transcription start site region 40252			227 bp downstream
Tssr40253	transcription start site region 40253			162 bp downstream
Tssr44585	transcription start site region 44585			408 bp upstream
Tssr44586	transcription start site region 44586			385 bp upstream
Tssr44587	transcription start site region 44587			351 bp upstream