rs578744682 SNP Detail

Summary

• ID
  rs578744682
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156266973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGGAGGGGAG GGGAGGGGAG
  G
  GGAGGGGAGA GGAGAGGAGA GGAGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MA/MyJ	NZO/HlLtJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ZALENDE/EiJ
ss916534692	MGP_WTSI_3_156561336	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MA/MyJ	NZO/HlLtJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ZALENDE/EiJ
rs578744682					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916534692	MGP_WTSI_3_156561336	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156266973 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	within coordinates
Cpgi13974	CpG island 13974	within coordinates
Negr1	neuronal growth regulator 1	mRNA-UTR
Rr587959	regulatory region 587959	within coordinates
Rr587960	regulatory region 587960	307 bp proximal
Rr587961	regulatory region 587961	644 bp proximal
Rr587962	regulatory region 587962	769 bp proximal
Tssr32476	transcription start site region 32476	456 bp upstream
Tssr32477	transcription start site region 32477	614 bp upstream
Tssr32478	transcription start site region 32478	759 bp upstream
Tssr32479	transcription start site region 32479	805 bp upstream
Tssr32480	transcription start site region 32480	1335 bp upstream
Tssr32481	transcription start site region 32481	1449 bp upstream
Tssr36286	transcription start site region 36286	411 bp downstream