rs578643722 SNP Detail

Summary

• ID
  rs578643722
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17838078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG TGTGTGTGTG TGTGTGTGTG
  W
  GTGTGTGTGT GTGTGTGTGT GTGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	WSB/EiJ
ss915951161	MGP_WTSI_3_17783914	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	A	T	T	A	A	A	A	A	T	A	A	A	T	A	T	A	T	A	A	A	A	A	T	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	WSB/EiJ
rs578643722					SNP	T	T	A	A	T	T	A	A	A	A	A	T	A	A	A	T	A	T	A	T	A	A	A	A	A	T	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915951161	MGP_WTSI_3_17783914	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17838078 () rs orientation: forward

Symbol	Name	Function Class
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	within coordinates
Rr573837	regulatory region 573837	84 bp proximal
Rr573838	regulatory region 573838	793 bp proximal
Rr573839	regulatory region 573839	1688 bp proximal
Tssr32672	transcription start site region 32672	1391 bp downstream
Tssr32673	transcription start site region 32673	1612 bp downstream
Tssr32674	transcription start site region 32674	1654 bp downstream
Tssr32675	transcription start site region 32675	1693 bp downstream