rs578517337 SNP Detail

Summary

• ID
  rs578517337
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:95854456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAT TGAGAGCAAC GCGGGTGGTG
  G
  TGGGGGGGGG GGAGGGCGGG GGTTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss916939626	MGP_WTSI_4_95966219	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs578517337					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916939626	MGP_WTSI_4_95966219	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95854456 () rs orientation: forward

Symbol	Name	Function Class
9530080O11Rik	RIKEN cDNA 9530080O11 gene	within coordinates
Cpgi14458	CpG island 14458	624 bp proximal
Hook1	hook microtubule tethering protein 1	1021 bp upstream
Rr398349	regulatory region 398349	743 bp upstream
Rr595498	regulatory region 595498	411 bp distal
Rr595499	regulatory region 595499	219 bp proximal
Rr595500	regulatory region 595500	740 bp proximal
Rr595501	regulatory region 595501	1426 bp proximal
Tssr37834	transcription start site region 37834	898 bp upstream
Tssr37835	transcription start site region 37835	986 bp upstream
Tssr37836	transcription start site region 37836	1103 bp upstream
Tssr37837	transcription start site region 37837	1165 bp upstream
Tssr37838	transcription start site region 37838	1186 bp upstream
Tssr42465	transcription start site region 42465	786 bp downstream