rs52609472 SNP Detail

Summary

• ID
  rs52609472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189495490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTAAAGAT GACTTTTTAT TCATGTGTGT GTGTGTGTGT
  GCATAATGTG TGTCCTATGT GTGCAGGGAT ATGTGCCCTG TGGGAGGTCA AAGGTCTACA
  Y
  GGAACAACTT CCCTGATTGC CTTCCACTGG ATTTCTGAGA CAGGGTCTCT CGTGGGTTCT
  AGAGCTCATG GATCCTGCTG CGTCACCGGT GAGCCCCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146490528	ENSMUSSNP765632	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320191525	CHEV_1_191587172	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52609472					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189495490 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr372632	regulatory region 372632	915 bp downstream
Rr425841	regulatory region 425841	1003 bp distal
Rr425842	regulatory region 425842	986 bp proximal