rs52608546 SNP Detail

Summary

• ID
  rs52608546
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:47056325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCCCTGTGAA TCCAGCTCTG CCCTCTGCTG GTATCCATGG
  GCATTGCACT CACTCACATG AGCACACACA CACACACACA CACACACACA CACACACACA
  C
  AGAGAGAGAA AGAAAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AATCCATGTA CATAAATAAG AAAATAAGGG AGATACCACA C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148981298	ENSMUSSNP6482048	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52608546					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47056325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22960	predicted gene, 22960			157 bp downstream
Kif13a	kinesin family member 13A			Intron
				Noncoding-Transcript-Variant
Rr478995	regulatory region 478995			1672 bp distal
Rr478996	regulatory region 478996			65 bp distal
Rr478997	regulatory region 478997			20 bp proximal