rs52571959 SNP Detail

Summary

• ID
  rs52571959
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTTATTTGCA CTCAATGGTT TAGGGTCAGG ACTCTGACTC
  ACTTGTTTCT AAGGAAACAT ACTACAAATG ACTGGAAACT CCACCCCTTT AAGCTTAGAA
  A
  CAAAAACAAA AAACAAAAAA CAAAAAAAAA AGGAAAGAAA AGAAAGAAAT CCCTTTTGCT
  TACTCTTAAA TTCTACATGT CTACATGATT GAAAATATTT A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136016104	ENSMUSSNP1840023	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52571959					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325684 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	740 bp upstream
Gbp2b	guanylate binding protein 2b	744 bp downstream
Gm54185	predicted gene, 54185	641 bp upstream
Rr398088	regulatory region 398088	within coordinates
Rr586457	regulatory region 586457	947 bp distal
Rr586458	regulatory region 586458	189 bp proximal
Rr586459	regulatory region 586459	690 bp proximal
Tssr32216	transcription start site region 32216	1738 bp downstream
Tssr32217	transcription start site region 32217	1700 bp downstream
Tssr32218	transcription start site region 32218	1646 bp downstream
Tssr32219	transcription start site region 32219	1609 bp downstream
Tssr32220	transcription start site region 32220	1595 bp downstream
Tssr32221	transcription start site region 32221	1577 bp downstream
Tssr32222	transcription start site region 32222	1521 bp downstream
Tssr32223	transcription start site region 32223	1464 bp downstream
Tssr32224	transcription start site region 32224	1410 bp downstream
Tssr32225	transcription start site region 32225	1072 bp downstream
Tssr32226	transcription start site region 32226	1032 bp downstream
Tssr32227	transcription start site region 32227	673 bp upstream
Tssr32228	transcription start site region 32228	724 bp upstream
Tssr32229	transcription start site region 32229	763 bp upstream
Tssr32230	transcription start site region 32230	799 bp upstream
Tssr32231	transcription start site region 32231	816 bp upstream
Tssr32232	transcription start site region 32232	1350 bp upstream
Tssr35947	transcription start site region 35947	742 bp upstream