rs52571054 SNP Detail

Summary

• ID
  rs52571054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161616695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTCAGAAG AGTTTGAGAT AAGCAATAAA
  TAGCATTTTT ATAGCAAGTG TGCCTTAACC ATCACACAGC ACATACTAAA ACATTATTCA
  ACATTTACAA CAAATTTAAG TATATATCTT ATGCCTTTAT AAAACCGACC ACTCTGCCTT
  R
  GGTTTGACTT CAGTCTTCTG GCcacacaca cacacacaca cacacaagtc ttctggccac
  acacacacac acacacacac acacacaagt cttctggcca cacacacaca cacacacaca
  cCATTTATGT CTAATAACCT CTAAGAACTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss60335629	NES15842722	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G		G	G
ss320081630	CHEV_1_163719257	CHEVERUD	SCREENING_POP	f	SNP						A			G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs52571054					SNP	A	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335629	NES15842722	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161616695 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	631 bp upstream
Rr421846	regulatory region 421846	455 bp distal
Tssr14586	transcription start site region 14586	751 bp upstream
Tssr14587	transcription start site region 14587	670 bp upstream
Tssr14588	transcription start site region 14588	655 bp upstream
Tssr14589	transcription start site region 14589	643 bp upstream
Tssr14590	transcription start site region 14590	630 bp upstream
Tssr14591	transcription start site region 14591	620 bp upstream