rs52568382 SNP Detail

Summary

• ID
  rs52568382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107546168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CGATGAACCA GGAGCTAAGT GATTCAGCCA GACTAAATGG
  CCAGGAAGCA ACAGGAATGA ATATATATAT ATATATATAT ATATATATAT ATATATATAT
  R
  TATATGTATA TATATATATA TATATGTGTA TTCCTGTTGA AGAATATTTG ATCACATTGT
  GAACCCTGAG ATTGTTATTT ACTGAAAAAA AAATGTTTCT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147182429	ENSMUSSNP3247298	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52568382					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107546168 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	629 bp upstream
Gm12899	predicted gene 12899	293 bp downstream
Rr376978	regulatory region 376978	160 bp downstream
Rr597042	regulatory region 597042	282 bp distal
Tssr38260	transcription start site region 38260	478 bp downstream