rs52512066 SNP Detail

Summary

• ID
  rs52512066
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155870970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACATATC CTCTTCCACT
  M
  TGGCTAGACA AGGCAGCCCA GTTAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148115554	ENSMUSSNP5059870	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321442842	CHEV_4_155160622	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52512066					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155870970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15485	CpG island 15485	1761 bp distal
Rr606570	regulatory region 606570	1847 bp distal
Rr606571	regulatory region 606571	335 bp distal
Rr606572	regulatory region 606572	1908 bp proximal
Tmem278	transmembrane protein 278	639 bp upstream
Tssr44972	transcription start site region 44972	1580 bp upstream
Tssr44973	transcription start site region 44973	1559 bp upstream
Tssr44974	transcription start site region 44974	1495 bp upstream
Tssr44975	transcription start site region 44975	1474 bp upstream
Tssr44976	transcription start site region 44976	1461 bp upstream
Tssr44977	transcription start site region 44977	1439 bp upstream
Tssr44978	transcription start site region 44978	633 bp upstream
Tssr44979	transcription start site region 44979	593 bp upstream