rs52462070 SNP Detail

Summary

• ID
  rs52462070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189495399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTACCACA GGTTTGCTGC AAACCTGTTG CAAGCTGACT
  CTTTAGTCCC ACCTAGAATA AATACTTCTT ATTTATAAAT AATAATCATT TTCTTAAAGA
  Y
  GACTTTTTAT TCATGTGTGT GTGTGTGTGT GCATAATGTG TGTCCTATGT GTGCAGGGAT
  ATGTGCCCTG TGGGAGGTCA AAGGTCTACA TGGAACAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146490526	ENSMUSSNP88468	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320191524	CHEV_1_191587081	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52462070					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189495399 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr372632	regulatory region 372632	824 bp downstream
Rr425841	regulatory region 425841	912 bp distal
Rr425842	regulatory region 425842	1077 bp proximal