rs52448283 SNP Detail

Summary

• ID
  rs52448283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172037930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGAAGGGC ACAGATGGCA GAAAGGTACA ACAAGTAAGG
  AGCAAGTGGG GCTGGTACTC GGCTGCCACG GCCACTCGTC ATCTAGTCGT CGTCATCATC
  R
  TCGTCATCGT CATCGTCGTC ATCGTCGTCG TCATCCTCTG TGTTGATCTC GCCCTCCAGC
  ACGTCCTCCA GCCAGTCCTC CAGCTCATCA GCAGAAGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss120010354	PARCsnp_1.07444	PARC_SEQ	INBRED	f	SNP			A	G
ss146184000	ENSMUSSNP1333513	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs52448283					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172037930 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	Coding-Synonymous
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	18 bp downstream
Tssr15168	transcription start site region 15168	237 bp upstream
Tssr15169	transcription start site region 15169	159 bp upstream
Tssr15170	transcription start site region 15170	137 bp upstream
Tssr15171	transcription start site region 15171	119 bp upstream
Tssr15172	transcription start site region 15172	38 bp upstream
Tssr15173	transcription start site region 15173	45 bp downstream
Tssr15174	transcription start site region 15174	97 bp downstream
Tssr15175	transcription start site region 15175	1620 bp downstream