rs52427230 SNP Detail

Summary

• ID
  rs52427230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168009536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGGCC TCTTGAGTGT
  ATGCTTTCTT TGGGAGGTGA AAGCCAGTTC TTGCAGATGC ATAACTCTCG ACCACTGAGT
  CACACCCCCA GCCCTTTGGG GGACAGGATC TCTGTGTAAC GCAGGCTGCC CTTAAACTCA
  TGATAAACTC CTGCCTCCAC CCCCTGAGAG CTGCGATTTG TTATTGCATC TTTGGGGTTT
  Y
  GATATTTATT TATTATTATT CATGCATATG ATGTGTGTGT GTGCGCGCGC GTGTGCTCAT
  GTGTGCGCAC GCGTGGGTCT ATGTGTCACA CAGTACTTGT GTGGAAGTCA GAAAACAACT
  GGATGGAGTC TGGAGTCGGC CTTTCTACCT TTTATATGAA TTCTAGGGGT CAAGCTCAGG
  CCACCAGGCC TACATGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148267271	ENSMUSSNP4387359	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52427230					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168009536 () rs orientation: forward

Symbol	Name	Function Class
Gm52960	predicted gene, 52960	within coordinates
Gm54130	predicted gene, 54130	822 bp upstream
Rr570912	regulatory region 570912	157 bp distal
Rr570913	regulatory region 570913	968 bp proximal
Rr570914	regulatory region 570914	1605 bp proximal