rs52421715 SNP Detail

Summary

• ID
  rs52421715
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79053746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CATAGTAAAT AAGACTGTCT TAAAATTTAT AAAATGCAGG
  CTTAGCAAGC TTTGTTAAAT TTAGAAGATG AAATCACACA CACACACACA CACACACACA
  C
  ATACACACAC ACACACACAC ACACACACAC ACGCACGCAC GCACAGATGC ACATATGGTC
  GTGTCAATAA TATTATAATA AACCACCTGG GTTGTTTTTT T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135368232	ENSMUSSNP3649897	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52421715					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79053746 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			1933 bp distal
Rr578467	regulatory region 578467			972 bp distal
Rr578468	regulatory region 578468			74 bp distal
Tssr33632	transcription start site region 33632			509 bp upstream
Tssr33633	transcription start site region 33633			1062 bp downstream