rs52401195 SNP Detail

Summary

• ID
  rs52401195
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79476614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCGTCCTCCC CCTTTTGGTG CCCAAGGGCA CTGCACTCAG
  AGGCACAAAG TTACACAATG CGCGCGCATG CACACACACA CACACACACA CACACACACA
  S
  AGAGAGAGAG AGAGAGCGCT AAAAAGCAAA ACAAGCAAAC AAAAAAAGAG GACATTTAGA
  CGTTTAAAAG CAAACATATT TCACAAATAT AAGTAATCAA A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135372856	ENSMUSSNP976411	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52401195					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79476614 () rs orientation: forward

Symbol	Name	Function Class
4930589L23Rik	RIKEN cDNA 4930589L23 gene	within coordinates
Cpgi13275	CpG island 13275	1045 bp distal
Fnip2	folliculin interacting protein 2	1511 bp upstream
Gm64946	predicted gene, 64946	981 bp downstream
Rr578548	regulatory region 578548	1636 bp distal
Rr578549	regulatory region 578549	1130 bp distal
Rr578550	regulatory region 578550	9 bp distal
Rr578551	regulatory region 578551	78 bp distal
Tssr29585	transcription start site region 29585	995 bp downstream
Tssr33723	transcription start site region 33723	1932 bp upstream
Tssr33724	transcription start site region 33724	1613 bp upstream
Tssr33725	transcription start site region 33725	1543 bp upstream
Tssr33726	transcription start site region 33726	1517 bp upstream
Tssr33727	transcription start site region 33727	1444 bp upstream
Tssr33728	transcription start site region 33728	1153 bp upstream