rs52399313 SNP Detail

Summary

• ID
  rs52399313
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14714754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTATAAA GAAATCTTTC
  TTATATAAGG TGGATAGGTC TTGAAATTTA AGACTCTGAA GAGTAATTTA AATATCTGTT
  ACTAAGTCTG TATCTCCCTT TTCTTGCACA ATTCTGTGGT ATGCTGGAGT TTAGTTACTA
  TTACGCATAT TCAGCCAGCA TACAATGTTT CCTTTCCATT CCTGCCTCTT CAGCAGACAA
  K
  GGAACTAGGC AGAAATCGTT TAGGGCTCTC CTTCCTTCGC CTCCTTCCCC CTCCCTTCCT
  CTTCATTCTT TCCCCTTTCT TTCCTCCCTC ATTCCCTTCC TTCCTTCCTT TCTTTTTCTT
  ATTTTTTTTT TTTTTTTTTT TGCACAGGAT AGCCCAAAGT CACTGGCCAG GGTGCCAAGA
  TTATAGGTGT GTGCTACCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60371900	NES15873909	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52399313					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60371900	NES15873909	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14714754 () rs orientation: forward

Symbol	Name	Function Class
Car13	carbonic anhydrase 13	Intron
Rr374549	regulatory region 374549	396 bp downstream
Rr573698	regulatory region 573698	524 bp distal
Tssr28416	transcription start site region 28416	139 bp upstream