rs52398553 SNP Detail

Summary

• ID
  rs52398553
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105352133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGTCACTTCT GTCCCCTGTA AACAGATTAC ATGTGAGGCA
  GTGCTCTCTC TCTCTCTCTC TCTAACGCTC TCTCTCTTCC TCCTCCTCCT CCTCTTCCTC
  T
  TCCTCCTCCT CCTCCTCTTC CTCCTCCTCC TCCTCTTCCT CCTCCAAATT CGCTTGAGGC
  TGTTTTCTTG AGACATCAGT GGCTTTAAAG CAAAACAAGG A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147167768	ENSMUSSNP6488351	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52398553					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105352133 () rs orientation: forward

Symbol	Name	Function Class
4930527A07Rik	RIKEN cDNA 4930527A07 gene	within coordinates
Rr562247	regulatory region 562247	93 bp proximal
Rr562248	regulatory region 562248	1392 bp proximal
Rr562249	regulatory region 562249	1421 bp proximal
Rr562250	regulatory region 562250	1599 bp proximal
Rr562251	regulatory region 562251	1874 bp proximal