rs52397057 SNP Detail

Summary

• ID
  rs52397057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79053748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TAGTAAATAA GACTGTCTTA AAATTTATAA AATGCAGGCT
  TAGCAAGCTT TGTTAAATTT AGAAGATGAA ATCACACACA CACACACACA CACACACATA
  Y
  ACACACACAC ACACACACAC ACACACACAC GCACGCACGC ACAGATGCAC ATATGGTCGT
  GTCAATAATA TTATAATAAA CCACCTGGGT TGTTTTTTTT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135368235	ENSMUSSNP256752	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52397057					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79053748 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			1935 bp distal
Rr578467	regulatory region 578467			974 bp distal
Rr578468	regulatory region 578468			76 bp distal
Tssr33632	transcription start site region 33632			511 bp upstream
Tssr33633	transcription start site region 33633			1060 bp downstream