rs52396700 SNP Detail

Summary

• ID
  rs52396700
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16718013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCAAAT GGCAGGACAT
  TGAATTCCTC ACCAAACTCA ATATGTTCCT GCGGAGAGAG GGCAGGACGG TAGAGGATGT
  GGCCCGCATC CTCAGGCAGG AGCTGTGTCC CACCACGCTA GGTCTCGGAG AGCTACCTCC
  CAGGAAGGGC TGCCTGTCTC CGCAAGGGGA GAATGAAGAC AAGGGGCCCA TCACCAAGGG
  K
  AATGGGGTGC CCCCTCTGGA GGACCCAGAG AAGGAGGACA AGCCTGAAGA AGGAAAGAAG
  GGCAAGAAGA AAAACAAGAA AAATCGGCGC CGACAGCAGG CTTCTGATAA GAAGCTGTGA
  GTTATGATGA GTGTATATGG GGAGGGGGTG CGCAAGGGAG GGTGGGAGTC ATCTGAATTG
  GGGTGATTGT GGGAAGGTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148401949	ENSMUSSNP6224991	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52396700					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16718013 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	Coding-Synonymous
Rr642835	regulatory region 642835	992 bp distal
Tssr64666	transcription start site region 64666	938 bp downstream
Tssr64667	transcription start site region 64667	905 bp downstream