rs52378286 SNP Detail

Summary

• ID
  rs52378286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85340481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACTTTG GAGGGACCAT
  AGGACTGGCT ACTTACAATG TGTGTGAACA GAAAGGGGAG GGTAGAAGAC ATTCCAGATA
  CAAAAAAAAA AAAAAGAAAG TACAGGCACT CGGAGGGCTG CAAATAGCAG ACTGGAGCAG
  ACTGGGGCAG ACTGGAGCAG ACTGGGGCAG ACAGGAGACT ATCTAGACCA TACAAAAGAA
  Y
  TAGGACTTTC TTCTCTTTTC TTTTCTTTGT TTGTTTGTTT GTTTTGTTTT ATTTATTGTT
  GTTGTTTTTC AAGACAGGGT TTTTCTATGT AGCCTTGGCT GTCCTGTCCT GGAACTTACT
  CTGTAGACCA GAACTCAGAT TTCATTTCTT TTCTTAAAGA TTTACTCTAT TGTTTATATG
  TAGGTGCATG CATCTGTGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906860	NES15949990	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52378286					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906860	NES15949990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85340481 () rs orientation: forward

Symbol	Name	Function Class
Rab11fip5	RAB11 family interacting protein 5 (class I)	Intron
Rr633187	regulatory region 633187	233 bp proximal
Rr633188	regulatory region 633188	549 bp proximal