rs52369876 SNP Detail

Summary

• ID
  rs52369876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156267383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCTGCCTGGT CCTCCATCCC
  Y
  GGGCGGGGTT GCTACGGAAA CGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321033459	CHEV_3_156224710	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52369876					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156267383 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	within coordinates
Cpgi13974	CpG island 13974	within coordinates
Negr1	neuronal growth regulator 1	mRNA-UTR
Rr587959	regulatory region 587959	104 bp distal
Rr587960	regulatory region 587960	within coordinates
Rr587961	regulatory region 587961	234 bp proximal
Rr587962	regulatory region 587962	359 bp proximal
Tssr32476	transcription start site region 32476	46 bp upstream
Tssr32477	transcription start site region 32477	204 bp upstream
Tssr32478	transcription start site region 32478	349 bp upstream
Tssr32479	transcription start site region 32479	395 bp upstream
Tssr32480	transcription start site region 32480	925 bp upstream
Tssr32481	transcription start site region 32481	1039 bp upstream
Tssr36286	transcription start site region 36286	1 bp downstream