rs52344348 SNP Detail

Summary

• ID
  rs52344348
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119238723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACAAAATG ATCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTGTGT GTGTGTGTAT GTGTGTATAC ACAGTATATG TGGCCACACT TGTAATGTCT
  T
  CCATGTGGAG GACAGAGGAC AACTTTTGTG GAGTCTTTTT TCTCCCTCTC CTTTTATGTG
  GTTCCGAGGA TTGAACTCAG GTCTCCAAGC TTGTATTTT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147328405	ENSMUSSNP635439	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52344348					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119238723 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc30	coiled-coil domain containing 30			Intron
				Noncoding-Transcript-Variant
Rr598572	regulatory region 598572			134 bp proximal