rs52329758 SNP Detail

Summary

• ID
  rs52329758
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79475465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGTA GGGAGGAGTG GGGCGGGGCG
  C
  GTGGGGGGAG GGGGAGGAGC ATAGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320811462	CHEV_3_79372080	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52329758					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79475465 () rs orientation: forward

Symbol	Name	Function Class
4930589L23Rik	RIKEN cDNA 4930589L23 gene	34 bp upstream
Cpgi13275	CpG island 13275	within coordinates
Fnip2	folliculin interacting protein 2	362 bp upstream
Rr578548	regulatory region 578548	487 bp distal
Rr578549	regulatory region 578549	within coordinates
Rr578550	regulatory region 578550	20 bp proximal
Rr578551	regulatory region 578551	1050 bp proximal
Tssr29585	transcription start site region 29585	144 bp upstream
Tssr33723	transcription start site region 33723	783 bp upstream
Tssr33724	transcription start site region 33724	464 bp upstream
Tssr33725	transcription start site region 33725	394 bp upstream
Tssr33726	transcription start site region 33726	368 bp upstream
Tssr33727	transcription start site region 33727	295 bp upstream
Tssr33728	transcription start site region 33728	4 bp upstream