rs52327257 SNP Detail

Summary

• ID
  rs52327257
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118845440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GACCCCAATA ATGACAGGAG GGGCTTAGGG AGCCCTCCCT
  ACTCTTTTGA ATACCATCAA TAAAAGTTCA CTGCACACCC CCACCCAAAA AAAAAAAAAG
  G
  AAAGGAAAGG AGAGGAGAGG AGAGGAGAGG AGAGGAGAGG AGAGGAGAGG AGAGGAGAGG
  AGAGGAGAGG AGAGGAGAGG AAAGGAAAGG AAAGGAAAGG A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147321685	ENSMUSSNP4392416	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52327257					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118845440 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	within coordinates
Gm12864	predicted gene 12864	224 bp downstream
Gm12865	predicted gene 12865	within coordinates
Rr598446	regulatory region 598446	382 bp proximal
Rr598447	regulatory region 598447	472 bp proximal
Tssr38691	transcription start site region 38691	1299 bp downstream
Tssr38692	transcription start site region 38692	772 bp downstream