rs52318004 SNP Detail

Summary

• ID
  rs52318004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83843319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAATACAA TTTAAAAATT AAATGATGTG ATGGAACACC
  CCTAGTAAAT TGGCATTTAT ATGTTTGTGT GTCAGATTTC TGTTTCTTCC ACAAAAGACC
  R
  GTTTAAAAAA AAATCAAAGT AGGAAAGGTT TACTTATTTT TTTAAAAAAG ATTTATTTAT
  TTTATTTATA TGAGTACACT GTAGCTGTCT TCACACACAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60905759	NES15947022	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52318004					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905759	NES15947022	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83843319 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17620	CpG island 17620	611 bp proximal
Rr632959	regulatory region 632959	262 bp proximal
Tssr57384	transcription start site region 57384	766 bp upstream
Tssr57385	transcription start site region 57385	795 bp upstream
Tssr57386	transcription start site region 57386	1080 bp upstream
Zfp638	zinc finger protein 638	731 bp upstream