rs52263417 SNP Detail

Summary

• ID
  rs52263417
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81965466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT GCACACAGGC AAAGTCACAC
  W
  CGCATGTGTC TGCACACTCA CACAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133338868	ENSMUSSNP1939108	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321840819	CHEV_6_81938479	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52263417					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81965466 () rs orientation: forward

Symbol	Name	Function Class
Gm20383	predicted gene, 20383	within coordinates
Gm44202	predicted gene, 44202	1710 bp upstream
Rr632571	regulatory region 632571	1227 bp distal
Rr632572	regulatory region 632572	1307 bp distal
Rr632573	regulatory region 632573	888 bp distal
Rr632574	regulatory region 632574	1538 bp proximal