rs52251239 SNP Detail

Summary

• ID
  rs52251239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83890018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTTGGAAGGA ATATCTCTGC TTGCTCCACA CCACTGGACT
  CCTAAAAATT TCACCGAGGA GGATGGTTCT TTAATTTTTA TTTTTTTTAA TTTGTAATTT
  Y
  TTGTTTTTTT GTTTGTTTGT TTGTTTTTTT TGTTTTGTTT TTTTTTGTTT TTTGTTTTTT
  TTTTCAAGAC AGGGTTTCTC TGTGTAGCCC TGGCTGTCCT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss133350540	ENSMUSSNP856322	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52251239					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83890018 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17621	CpG island 17621			1123 bp proximal
Rr632965	regulatory region 632965			841 bp proximal
Rr632966	regulatory region 632966			1039 bp proximal
Rr632967	regulatory region 632967			1230 bp proximal
Rr632968	regulatory region 632968			1367 bp proximal
Tssr57387	transcription start site region 57387			1318 bp upstream
Zfp638	zinc finger protein 638			Intron
				Noncoding-Transcript-Variant