rs52249131 SNP Detail

Summary

• ID
  rs52249131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76419106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTTTTC AAATTCTGTG
  TCCCAACTCT CGGGTGACAT CCCTTATCCA TTTCTATAAC CACCTTTTGG GGGGGTGGTG
  TCCCCGTCCT GCTATTAGAA CGTGAGGCAT GCTGACACTG TTGTATGGCT TCATAGAGGG
  CCAAATAGTC TTTGTTGGGA TGAATTCTAA TCTTAAAAGG GACAGTTTTC CTCCTATTTA
  Y
  GTTGAGGTAA TCAAAGCTGT CCCTGACTGT CTCTGACTGT CCCTGACTGT CTCTGACTAT
  CTCTGACTGT GAGATTCTGT TAGATTCTGA GTCAGATTTT TTTAAAATAA ATTTCTTTTT
  ATTTACTTAT GTATTTATTT ATTTTATTAA TCATTTTATT CATTTACATT TCAATGATAT
  CCCCTTCCCA GTTACCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61289531	NES16898880	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ
rs52249131					SNP	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61289531	NES16898880	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76419106 () rs orientation: forward

Symbol	Name	Function Class
Ftcd	formiminotransferase cyclodeaminase	Intron
Tssr94192	transcription start site region 94192	1726 bp downstream
Tssr94193	transcription start site region 94193	603 bp upstream
Tssr94194	transcription start site region 94194	620 bp upstream