rs52200420 SNP Detail

Summary

• ID
  rs52200420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52163559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGAACT TGCAGGTGGA
  CCCTGCATCC ACTCTGGCCA TTCGTCTGTG CAAACATATC TATGTTTACA TCTCCTCTTG
  TAGAGACAAG TTGCACTTGG GACCACCCGG ATGATCTCAT TTTAACTTAC CTCCTTCGGG
  GCCCCATTAT TTCCATCACC GAGGTATTTG TGGCAGGTGG AGGTGGGAAG CTGGCCTTCA
  R
  TCTGAAAGGG ACACCAGAAT CTTCAAACAG TCAGGTTCCC CAAGCAAACA AAGCAAAAGA
  TAAAAACAAG TCAAAACAAA AACACAAAAC AACTTACATA TGCTGTGTCA ATCAAAGGAT
  GGAAGGCTTT TGCTTCCTTC TTCCTGCAGA GCTGGAGATT GGCGCACATA CCTTAGGGGA
  AGTTCTAGGA GAGCTACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410300	NES15916450	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52200420					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410300	NES15916450	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52163559 () rs orientation: forward

Symbol	Name	Function Class
Gm30125	predicted gene, 30125	within coordinates
Gm38132	predicted gene, 38132	within coordinates
Gm66188	predicted gene, 66188	within coordinates
Rr374956	regulatory region 374956	1144 bp downstream
Rr576480	regulatory region 576480	1577 bp distal
Rr576482	regulatory region 576482	1463 bp proximal
Rr576483	regulatory region 576483	1694 bp proximal