rs52181987 SNP Detail

Summary

• ID
  rs52181987
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:101041816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGTAAT AACTTGTGAT
  CTCCTTGTTT GTCTGTTTCC CTGCCCCCTC TCTGTCCCTA TGAAAAGCAT GTTTGATATC
  TTCATTTCTG TAAGATCACT GAACCACAAG GGTTTAGATC TAGCATAAAC CCGTTCAGAT
  TGTAAGGAAG TGTGTGTGTG TGTGTGTGTG TGTGTGTATT TGTGTGTTTA CATGTGTGTA
  W
  AAGGAGAATG GGTTCTTATT ACACTGTGTG TCCTTTAACT TTTCAAATAC ATGTTTTACA
  CACAAGCTCT AAATTTGGGC AGCCTACCCT ATTGAGACCT GGAAGACAGA GTTTGATAAG
  CCCGGAGAGT TCTACGGTGG GTTAGTCTGA GCATCATTTT GTTTACTTTG CATAATTTTG
  TATCACTTTT CTATTCCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133429400	ENSMUSSNP4616649	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52181987					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:101041816 () rs orientation: forward

Symbol	Name	Function Class
Gm43948	predicted gene, 43948	within coordinates
Gm43950	predicted gene, 43950	within coordinates
Rr635751	regulatory region 635751	780 bp distal