rs52180261 SNP Detail

Summary

• ID
  rs52180261
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79475915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT GGTTTTTTTT GTTTTTTGGG
  K
  TTTTTTTGGG TTTTTTGGTG TGTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320811463	CHEV_3_79372530	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52180261					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79475915 () rs orientation: forward

Symbol	Name	Function Class
4930589L23Rik	RIKEN cDNA 4930589L23 gene	within coordinates
Cpgi13275	CpG island 13275	346 bp distal
Fnip2	folliculin interacting protein 2	812 bp upstream
Gm64946	predicted gene, 64946	1680 bp downstream
Rr578548	regulatory region 578548	937 bp distal
Rr578549	regulatory region 578549	431 bp distal
Rr578550	regulatory region 578550	within coordinates
Rr578551	regulatory region 578551	600 bp proximal
Tssr29585	transcription start site region 29585	296 bp downstream
Tssr33723	transcription start site region 33723	1233 bp upstream
Tssr33724	transcription start site region 33724	914 bp upstream
Tssr33725	transcription start site region 33725	844 bp upstream
Tssr33726	transcription start site region 33726	818 bp upstream
Tssr33727	transcription start site region 33727	745 bp upstream
Tssr33728	transcription start site region 33728	454 bp upstream