rs52164998 SNP Detail

Summary

• ID
  rs52164998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132444246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGCCCTGT TTCTTCACAA CTGCTTTCAG
  CAGCATAAAG GAGAGCCAGC CGAAGCTGCT CTTTGAATGG CACGATACAG ACTGCTCTAA
  ATGACCAAAA TAAACTAAAA AAAATACATG CAtgtgtgca tgtgtatatg tgtgtgcatg
  Y
  ggtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgAAGG CTACATATCT TGTATACATT
  CTGTTTCCTG CTTTCTGGAA ACAAAAATCT TAAGGCTTAA AGCTGGATTC AAAGTATCTA
  AATTCAGAGT AAATGGCAAG CAGTCAAATT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320509494	CHEV_2_132428062	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52164998					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132444246 () rs orientation: forward

Symbol	Name	Function Class
AU019990	expressed sequence AU019990	within coordinates
Gm75202	predicted gene, 75202	1156 bp upstream
Rr565501	regulatory region 565501	1736 bp distal
Rr565502	regulatory region 565502	60 bp distal
Tssr26480	transcription start site region 26480	1155 bp upstream