rs52119699 SNP Detail

Summary

• ID
  rs52119699
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118604254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGTGGAAGAA AGCCCGATTC CCAAGTACAA GGCTCCACAT
  TTGATCTGCA ACTCTGTACC TTTGGTTTTG TTTGTTTGTT TGTTTTTTGG TTTTTTTTTT
  K
  TTTTTTTTTG GAGACAGGGT TTCTCTGTAT AGCCCTGGCT GTCCTGGAAC TCACTTTGTA
  GACCAGGCTG GCCTCGAACT CAGAAATCCG CCTGCCTCTG C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147312431	ENSMUSSNP1427953	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52119699					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118604254 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	919 bp proximal
Gm54146	predicted gene, 54146	within coordinates
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563334	regulatory region 563334	994 bp distal
Rr563335	regulatory region 563335	544 bp distal
Rr563336	regulatory region 563336	529 bp proximal
Rr563337	regulatory region 563337	1692 bp proximal
Tssr19573	transcription start site region 19573	993 bp downstream