rs52117481 SNP Detail

Summary

• ID
  rs52117481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120931816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AACTGCCTAC CTACCCACAT GCCCATCTGC TCACCTGCCC
  ATCTACTCAC CTACCCACCT GCTCACCTGC CCATCTGCCC ACCTACCCAC CTGCTCACCT
  R
  CCCACCTGTT TACCTGCCCA CCTACCCACC TGCTCACCTG CCCATCTGCC CACCTACCCA
  CCTGATCACC TGCCCACCTG CTCACCTGCC CACCTACCCA C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147379285	ENSMUSSNP4270350	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52117481					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120931816 () rs orientation: forward

Symbol	Name	Function Class
Rr563773	regulatory region 563773	579 bp proximal
Rr563774	regulatory region 563774	877 bp proximal
Tgm7	transglutaminase 7	Intron
Tssr25900	transcription start site region 25900	170 bp upstream