rs52113584 SNP Detail

Summary

• ID
  rs52113584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116458282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGCAT TTGTGTTGTA
  GAGACAGTGT GACCAGGAGT TCAAGGCCAG CCTCTACAGC AAATTCAAGG TTAGCCCCAG
  GCTACATGAA AACCAGACTG AGCTGGGCGT GGTGGCGCAC GCCTTTAATC CCAGCACTTG
  GGAGTCAGAG GCAGGCGGAT TTCTGAGTTC GAGGCCAGCC TGGACTACAG AGTGAGGTCC
  R
  GGACAGCCAG GGCTATACAG AGAAACCCTG TCCCGAAAAA CCAAAAACAA AATAAAATGA
  AAGACTGGAA AAAAATACTA TGTGGTTACT CCAACTTTTT ATGACCTCCA AAAATCATAC
  TTCAGCTATA TCAAAGTTAC TTTTAAAATA TGATTGGTTA TTGTCAGTTA TTCAAGCTAT
  TTGAATACCT ACAATAGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135670788	ENSMUSSNP1239724	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52113584					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116458282 () rs orientation: forward

Symbol	Name	Function Class
4930512P04Rik	RIKEN cDNA 4930512P04 gene	478 bp downstream
Cpgi13738	CpG island 13738	1605 bp distal
Gm43191	predicted gene 43191	Intron
Rr375625	regulatory region 375625	within coordinates
Rr397966	regulatory region 397966	1832 bp downstream
Rr583758	regulatory region 583758	1967 bp distal
Rr583759	regulatory region 583759	1466 bp distal
Tssr35329	transcription start site region 35329	1992 bp upstream
Tssr35330	transcription start site region 35330	1979 bp upstream