rs52112607 SNP Detail

Summary

• ID
  rs52112607
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83893119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTTTTTTTTT AAAGATTTTT
  W
  ATTTATTATT ATAGTAAGTA CACTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ
ss641098976	FVB_NJ_6_83866131	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	T	A	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ
rs52112607					SNP	T	T	T	A	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	T	A	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641098976	FVB_NJ_6_83866131	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83893119 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17621	CpG island 17621			983 bp distal
Rr632965	regulatory region 632965			1735 bp distal
Rr632967	regulatory region 632967			1850 bp distal
Rr632968	regulatory region 632968			705 bp distal
Tssr57387	transcription start site region 57387			1726 bp downstream
Zfp638	zinc finger protein 638			Intron
				Noncoding-Transcript-Variant