rs52099801 SNP Detail

Summary

• ID
  rs52099801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52661081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gggcaggcc agatggctca gcaggggaag
  gaacttgata ccaagcctga gaacctgagt tccatcctcg agacccacat aggagagaga
  aatgactgct gaaagttttc ctctgatctc cacacctata cctcagaatg cacATGAGTG
  Y
  GGGcacacaa acacacacac acacacacac acacacacac acacacacac acatacaTAG
  AGTAATGATT TTAAAAAATT AAAGCATTTC GTTAATGTAT ACTCTGGGTT TTCCTTCTGA
  AAAAGACAAG ATATAGCCTC AGCAGTCTAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765055	CHEV_3_52557582	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52099801					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52661081 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	788 bp proximal
Tssr33262	transcription start site region 33262	1385 bp downstream