rs52099174 SNP Detail

Summary

• ID
  rs52099174
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79476612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGTCGTCCTC CCCCTTTTGG TGCCCAAGGG CACTGCACTC
  AGAGGCACAA AGTTACACAA TGCGCGCGCA TGCACACACA CACACACACA CACACACACA
  S
  ACAGAGAGAG AGAGAGAGCG CTAAAAAGCA AAACAAGCAA ACAAAAAAAG AGGACATTTA
  GACGTTTAAA AGCAAACATA TTTCACAAAT ATAAGTAATC A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135372855	ENSMUSSNP5662574	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52099174					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79476612 () rs orientation: forward

Symbol	Name	Function Class
4930589L23Rik	RIKEN cDNA 4930589L23 gene	within coordinates
Cpgi13275	CpG island 13275	1043 bp distal
Fnip2	folliculin interacting protein 2	1509 bp upstream
Gm64946	predicted gene, 64946	983 bp downstream
Rr578548	regulatory region 578548	1634 bp distal
Rr578549	regulatory region 578549	1128 bp distal
Rr578550	regulatory region 578550	7 bp distal
Rr578551	regulatory region 578551	76 bp distal
Tssr29585	transcription start site region 29585	993 bp downstream
Tssr33723	transcription start site region 33723	1930 bp upstream
Tssr33724	transcription start site region 33724	1611 bp upstream
Tssr33725	transcription start site region 33725	1541 bp upstream
Tssr33726	transcription start site region 33726	1515 bp upstream
Tssr33727	transcription start site region 33727	1442 bp upstream
Tssr33728	transcription start site region 33728	1151 bp upstream