rs52098582 SNP Detail

Summary

• ID
  rs52098582
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:41522626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GTGTGAGGCC AACCGGAGCT ACACAAAGAG TTCTAAGCCA
  GTGTGGAATA TAGAGAAATT TAGGCCATTA TGGATTGCAG ATTAAGATCC TGTCCACCCC
  A
  CCCCCTAAAA ATCCAAAGAA AGAAAAGAAA ACTATAGAGA CTCCTACCAA AAAGAATCAG
  AATTCCAGCA TGATGGCCGA AGAGTTTGAA GCCAAGCACT A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133130131	ENSMUSSNP7087098	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52098582					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41522626 () rs orientation: forward

Symbol	Name	Function Class
Gm68244	predicted gene, 68244	1402 bp upstream
Gm68268	predicted gene, 68268	407 bp upstream
Rr629250	regulatory region 629250	1648 bp distal
Rr629251	regulatory region 629251	912 bp distal
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	1038 bp upstream
Trbj2-7	T cell receptor beta joining 2-7	1836 bp downstream
Tssr1821	transcription start site region 1821	802 bp downstream
Tssr1822	transcription start site region 1822	1828 bp upstream
Tssr55942	transcription start site region 55942	1989 bp downstream
Tssr55943	transcription start site region 55943	1865 bp downstream
Tssr55944	transcription start site region 55944	1663 bp downstream
Tssr55945	transcription start site region 55945	1172 bp downstream
Tssr55946	transcription start site region 55946	859 bp downstream
Tssr55947	transcription start site region 55947	675 bp downstream
Tssr55948	transcription start site region 55948	385 bp upstream
Tssr55949	transcription start site region 55949	571 bp upstream
Tssr55950	transcription start site region 55950	878 bp upstream
Tssr55951	transcription start site region 55951	1605 bp upstream
Tssr55952	transcription start site region 55952	1652 bp upstream
Tssr55953	transcription start site region 55953	1688 bp upstream
Tssr55954	transcription start site region 55954	1736 bp upstream
Tssr55955	transcription start site region 55955	1761 bp upstream
Tssr55956	transcription start site region 55956	1802 bp upstream
Tssr60576	transcription start site region 60576	1413 bp upstream
Tssr60577	transcription start site region 60577	1323 bp upstream
Tssr60578	transcription start site region 60578	1302 bp upstream
Tssr60579	transcription start site region 60579	835 bp upstream