rs52097166 SNP Detail

Summary

• ID
  rs52097166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129087291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAATTAAAG ATTTATTTAT TTATTTATTT TATATATGTG
  AGTGCACTGT TTCTGTCTTC AGACACACTA GAAGGATCCC ATTACAGATG TTTGTGAGCT
  R
  CTATGTGGTT GCTGGGAACT GAACCCAGGA CCTCTGGTAG AGCAGAACTG CTGAGCCATC
  TCTTCAGCCC GAGGTTTTTT TTTGTTTTGT TTTGTTTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147584310	ENSMUSSNP4075843	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52097166					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129087291 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1005 bp upstream
Rr373845	regulatory region 373845	571 bp upstream
Rr564889	regulatory region 564889	1775 bp distal
Rr564890	regulatory region 564890	1155 bp distal
Rr564891	regulatory region 564891	712 bp distal
Rr564892	regulatory region 564892	195 bp distal
Rr564893	regulatory region 564893	138 bp proximal
Tssr20109	transcription start site region 20109	986 bp upstream