rs52060720 SNP Detail

Summary

• ID
  rs52060720
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103669923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAACTAA TGAGCCTTGT
  GTTCTGCATT TTTTGTACCC TTAAACAAGT TTGTTTGACC CAACAGAAAG TGCTTGATCA
  CATTCAGGCA GGAAGTGTGT CAGGATACAG GTTTGCCCCT GATTGGTCCT TGTGGGAAAT
  ACGTGGCCTT CTGCATGTGC CTTTAGAAGC CTCTGCAAAA TGTGACTCAT TACCATTTTT
  K
  GGGGGGGGAC CCCAGAATGG ACCTAGTCTG AGTCTATCAT CTTGGCCAGT ACTTAATCAA
  CGCTTGCTTC AATTTGGCTC AATTCGGTAG CGGTCTTATT CCATTTACGG GGTTAACAGG
  CTACTGCTGC GACAAACGTG ACCACATGGT TTGTAGGCTT TTTGAACTGG CTTGTATGAG
  GTGTGTGGAA GAGTTTGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147139693	ENSMUSSNP3683488	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52060720					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103669923 () rs orientation: forward

Symbol	Name	Function Class
Gm13875	predicted gene 13875	343 bp downstream
Gm56363	predicted gene, 56363	374 bp downstream
Gm75184	predicted gene, 75184	within coordinates
Rr561946	regulatory region 561946	878 bp distal
Tssr19174	transcription start site region 19174	650 bp downstream