rs52047917 SNP Detail

Summary

• ID
  rs52047917
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTTATC TTTCTTTTGC
  TGCTATGACA TGATTTGCAT ATCTCTGAAG ATAAATGCCT TTTACAATGT GGCAGAAGCA
  CTGTTTAAGT GAAAACTGTT AATAAAAATG ATTAAGCTTA CCATAATTGT TTCAAGTGCA
  TGCTGTACAT TGTTCATAAT GTAAGAAACG CCGCTCCTAA ATTTCTGTAA GAGGGGAGGT
  M
  ATTAGAAGAC TCTTAGCTGT CACACAGGCA CCCAATGATG AGGGGTTCAG CTCTGCAACT
  GAACATTCAG AATAACAGTA GTACCACACA GAGGAAATGT CACAGTCACG GGGCTTAGTA
  CTCTTGTGGA ATACAGAAAC ACAAAGATAC TTTCTGTATA ATTATTTTCT GGTAGTGGCA
  TTAAACCCAG GGCTTTAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136016083	ENSMUSSNP1318958	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52047917					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325021 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1403 bp upstream
Gbp2b	guanylate binding protein 2b	81 bp downstream
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	622 bp upstream
Rr586457	regulatory region 586457	284 bp distal
Rr586458	regulatory region 586458	852 bp proximal
Rr586459	regulatory region 586459	1353 bp proximal
Tssr32216	transcription start site region 32216	1075 bp downstream
Tssr32217	transcription start site region 32217	1037 bp downstream
Tssr32218	transcription start site region 32218	983 bp downstream
Tssr32219	transcription start site region 32219	946 bp downstream
Tssr32220	transcription start site region 32220	932 bp downstream
Tssr32221	transcription start site region 32221	914 bp downstream
Tssr32222	transcription start site region 32222	858 bp downstream
Tssr32223	transcription start site region 32223	801 bp downstream
Tssr32224	transcription start site region 32224	747 bp downstream
Tssr32225	transcription start site region 32225	409 bp downstream
Tssr32226	transcription start site region 32226	369 bp downstream
Tssr32227	transcription start site region 32227	1336 bp upstream
Tssr32228	transcription start site region 32228	1387 bp upstream
Tssr32229	transcription start site region 32229	1426 bp upstream
Tssr32230	transcription start site region 32230	1462 bp upstream
Tssr32231	transcription start site region 32231	1479 bp upstream
Tssr35947	transcription start site region 35947	79 bp upstream