rs52020431 SNP Detail

Summary

• ID
  rs52020431
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71157167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAACCAG ACTGACGGCA AGTTTTAGTT GTAAAGCTTT
  GGTGGAAACA ATGACAGCCT CGCTTTTTGC ACTTACAACC AAGCCTGCTT GTCACACTTG
  S
  ACAGTTTTCG ACTGCATGGT ACTTGTGTTC TAACAGCACA CGCGGTCCTA AATTCATCGT
  GGGAAAACTT TCAGAAACTA GTAAAAATTT TAAAGTCCAT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60272783	NES15767939	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52020431					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60272783	NES15767939	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71157167 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56903	predicted gene, 56903			1935 bp downstream
Gm56904	predicted gene, 56904			428 bp upstream
Rr530334	regulatory region 530334			1363 bp distal
Rr530335	regulatory region 530335			within coordinates
Rr530336	regulatory region 530336			506 bp proximal
Rr530337	regulatory region 530337			887 bp proximal
Rr530338	regulatory region 530338			1025 bp proximal
Rr530339	regulatory region 530339			1552 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				Noncoding-Transcript-Variant
Tssr145684	transcription start site region 145684			703 bp downstream
Tssr145685	transcription start site region 145685			within coordinates
Tssr145686	transcription start site region 145686			523 bp upstream
Tssr145687	transcription start site region 145687			1164 bp upstream
Tssr145688	transcription start site region 145688			1843 bp upstream
Tssr149219	transcription start site region 149219			880 bp upstream
Tssr149220	transcription start site region 149220			347 bp upstream
Tssr149221	transcription start site region 149221			181 bp downstream
Tssr149222	transcription start site region 149222			885 bp downstream
Tssr149223	transcription start site region 149223			903 bp downstream
Tssr149224	transcription start site region 149224			937 bp downstream
Tssr149225	transcription start site region 149225			1017 bp downstream
Tssr149226	transcription start site region 149226			1046 bp downstream
Tssr149227	transcription start site region 149227			1455 bp downstream
Tssr149228	transcription start site region 149228			1538 bp downstream
Tssr149229	transcription start site region 149229			1584 bp downstream
Tssr149230	transcription start site region 149230			1714 bp downstream