rs52016073 SNP Detail

Summary

• ID
  rs52016073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41441643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATCACC TTCCTACAGC
  AGCTGACAGC CACCTCCCAC TTGAGCACCA GGGATCCAAT GTGTCTGGCC TCTTCTCCTT
  GGACATCTGC ATTCATGTGC ACATAACCAT ACAGATACAT AGGTACACAC GTGCACACAC
  AGGCATACAT GCAGAACTAA AAATAAAATA AGTCTTTAAA ATAATTATTA AGTTGGAAAT
  Y
  TATCATTTCA TAACTTTATA AAACAGTTCA GGCTGAATGC TCAGTGGAAG CTAAAACACG
  TTGTGTAGTC TATTACTTAA TCTTGCAAAT ATTTCTTTGC AAATTACAAT TACAAAGAAA
  AAAGTGGTAA CTTGATGGGG GTTGTGGGGA ACTGCCAGAT ACTAGCTCAG CTGAAATAGA
  ACAGACAAAC CAACATTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60397846	NES15901413	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs52016073					SNP	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397846	NES15901413	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41441643 () rs orientation: forward

Symbol	Name	Function Class
Gm6069	predicted gene 6069	1013 bp downstream
Platr4	pluripotency associated transcript 4	473 bp downstream
Rr575951	regulatory region 575951	1035 bp proximal