rs52009997 SNP Detail

Summary

• ID
  rs52009997
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:47056056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT CACAATACAA AAGAAATAAA
  G
  GAGCTAGAAC GCTCTCTTTG GCAGC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148981277	ENSMUSSNP6979826	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss324334793	CHEV_13_46997949	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52009997					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47056056 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22960	predicted gene, 22960			11 bp upstream
Kif13a	kinesin family member 13A			Intron
				Noncoding-Transcript-Variant
Rr478995	regulatory region 478995			1403 bp distal
Rr478996	regulatory region 478996			183 bp proximal
Rr478997	regulatory region 478997			289 bp proximal