rs51973378 SNP Detail

Summary

• ID
  rs51973378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174274948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGTTTG CTCATCCAGA
  ACAAAGGACA CCCAATTACA GCAGAGAATT CTTTCTCTGT AAGTAAGGCC CATGAGACCA
  TCCACATGCC AGCTGTGCAC ACGCACATGC CACATCCAGT CATGCGGTGC TCTGCTTTAT
  TTTATTTGTT TGTTTGTTTA CTTTTAAGAT TTGAGATTGG GTGGGGCAGT GGCGGTGCAC
  R
  CCTTTAATCC CAGCACTTGG GAGGCAGAGG CAAGCAGATT TCTGAGTTCG AGGCCAGCCT
  GGTCTACAGA GTGAGTTCCA GGACAGCCAG GGCTATACAG AGAAACCCTG TGTAGAAAGA
  CAAAAAAAAA AAAAAAAATT GAGATTGAGC CTAGGGCCTC ATGTAAAGTA AGTAGGCCAG
  CACTCTACCA CTGAGCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148343386	ENSMUSSNP517800	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51973378					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174274948 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	1358 bp proximal
Tssr28023	transcription start site region 28023	714 bp upstream
Tssr28024	transcription start site region 28024	393 bp downstream
Tssr28025	transcription start site region 28025	472 bp downstream