rs51953660 SNP Detail

Summary

• ID
  rs51953660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:29231058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGAATGA TTTCATGTTT
  TTACACTGGC CTATCTCAGT TCCTTCTATA AAACTGACAC TGATTTACCT AAATCGCTGT
  AAAATTTCTC CTCAACTCCC GTGGTCTTTC TCTGCCAGCT ACACTTGTCC TGTAATAGAT
  TTAGTTAGAA CCCTCCCAAA TTCTCATGTC TAAGTCCCAA CCTATTGCCT CCATGTCATC
  R
  AGGATGTACA GCCCATGGAA ATGTAATAAA AGTTTAAGAG CTTACAACAC TGGCCTTGCT
  TTCCCCATTT GTGTACAAAG GTCCATGGGG CAAGATCTCT CAGAACCAAA TGTTTCCTCT
  TGCTGTTTTT ATTCTATGTT TCTCAACCTT CTGAAGAATG AGGCATAAAT CTGTCTGGTT
  TAAATCACCC AGTCCATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60381453	NES15887199	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51953660					SNP	G	G	A	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60381453	NES15887199	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29231058 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egfem1	EGF-like and EMI domain containing 1			Intron
				Noncoding-Transcript-Variant
Gm38029	predicted gene, 38029			within coordinates
Rr574662	regulatory region 574662			within coordinates