rs51951942 SNP Detail

Summary

• ID
  rs51951942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:91398684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA TGATAAATGT TCAGTATTTA
  R
  CAAAATAAGT CTGGTCTATC AGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	PWD/PhJ	WSB/EiJ
ss60293389	NES15791782	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	PWD/PhJ	WSB/EiJ
rs51951942					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60293389	NES15791782	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91398684 () rs orientation: forward

Symbol	Name	Function Class
Gm10308	predicted gene 10308	1865 bp downstream
Nrxn1	neurexin I	Intron
Rr533019	regulatory region 533019	66 bp distal
Rr533020	regulatory region 533020	388 bp distal
Rr533021	regulatory region 533021	543 bp proximal
Rr533022	regulatory region 533022	1467 bp proximal
Rr533023	regulatory region 533023	1507 bp proximal
Tssr149870	transcription start site region 149870	1459 bp downstream
Tssr149871	transcription start site region 149871	1567 bp downstream
Tssr149872	transcription start site region 149872	1604 bp downstream
Tssr149873	transcription start site region 149873	1728 bp downstream
Tssr149874	transcription start site region 149874	1762 bp downstream
Tssr149875	transcription start site region 149875	1814 bp downstream